Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: HSJD-DIPG-007
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX4147513
Illumina HiSeq 4000 sequencing; ChIP-seq of H3K27ac and H3K27me3 in HSJD-DIPG-007 cell line upon treatment with ICG-001 and JQ1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Neural
Cell type
HSJD-DIPG-007
NA
NA
Attributes by original data submitter
Sample
ENA first public
2020-07-17
ENA last update
2020-06-02
ENA-CHECKLIST
ERC000011
External Id
SAMEA6870824
INSDC center alias
Mayo Clinic
INSDC center name
Mayo Clinic
INSDC first public
2020-07-17T04:03:21Z
INSDC last update
2020-06-02T13:59:21Z
INSDC status
public
Submitter Id
E-MTAB-9152:HSJD-DIPG-007_input_JQ1_2
broker name
ArrayExpress
cell line
HSJD-DIPG-007
common name
human
developmental stage
adult
disease
diffuse intrinsic pontine glioma
organism part
brain
sample name
E-MTAB-9152:HSJD-DIPG-007_input_JQ1_2
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47530820
Reads aligned (%)
98.7
Duplicates removed (%)
15.4
Number of peaks
1159 (qval < 1E-05)
hg19
Number of total reads
47530820
Reads aligned (%)
98.3
Duplicates removed (%)
16.3
Number of peaks
1445 (qval < 1E-05)
Base call quality data from
DBCLS SRA