Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
HSJD-DIPG-007
NA
NA

Attributes by original data submitter

Sample

ENA first public
2020-07-17
ENA last update
2020-06-02
ENA-CHECKLIST
ERC000011
External Id
SAMEA6870824
INSDC center alias
Mayo Clinic
INSDC center name
Mayo Clinic
INSDC first public
2020-07-17T04:03:21Z
INSDC last update
2020-06-02T13:59:21Z
INSDC status
public
Submitter Id
E-MTAB-9152:HSJD-DIPG-007_input_JQ1_2
broker name
ArrayExpress
cell line
HSJD-DIPG-007
common name
human
developmental stage
adult
disease
diffuse intrinsic pontine glioma
organism part
brain
sample name
E-MTAB-9152:HSJD-DIPG-007_input_JQ1_2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
47530820
Reads aligned (%)
98.7
Duplicates removed (%)
15.4
Number of peaks
1159 (qval < 1E-05)

hg19

Number of total reads
47530820
Reads aligned (%)
98.3
Duplicates removed (%)
16.3
Number of peaks
1445 (qval < 1E-05)

Base call quality data from DBCLS SRA