Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: hESC H9
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX378294
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
Dpy30 shRNA
ArrayExpress-Genotype
Dpy30 shRNA
ArrayExpress-Immunoprecipitate
Anti H3K27me3
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929689
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:20Z
INSDC status
public
Submitter Id
Dpy30_KD_H3K27me3_replicate1-sc-2013-07-25T11:46:45Z-1672033
common name
human
sample description
ChIP for H3K4me27 from H9 cells expressing an shRNA against Dpy30
sample name
Dpy30_KD_H3K27me3_replicate1-sc-2013-07-25T11:46:45Z-1672033
Sequenced DNA Library
library_name
7997223
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
4942537
Reads aligned (%)
97.3
Duplicates removed (%)
1.2
Number of peaks
219 (qval < 1E-05)
hg19
Number of total reads
4942537
Reads aligned (%)
96.7
Duplicates removed (%)
1.3
Number of peaks
208 (qval < 1E-05)
Base call quality data from
DBCLS SRA