Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

ENA first public

2019-12-08

ENA last update

2019-12-05

ENA-CHECKLIST

ERC000011

External Id

SAMEA6367911

INSDC center alias

EPFL

INSDC center name

EPFL

INSDC first public

2019-12-08T17:04:28Z

INSDC last update

2019-12-05T11:55:21Z

INSDC status

public

Submitter Id

E-MTAB-8551:FloChIP H3k9me3

broker name

ArrayExpress

cell line

GM12878

common name

human

disease

normal

organism part

blood

sample name

E-MTAB-8551:FloChIP H3k9me3

Sequenced DNA Library

library_name

FloChIP H3k9me3_p

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Abcam antibodies: anti-H3K27ac ab4729, anti-H3K4me3 ab8580, anti-H3K4me1 ab8895, anti-H3K9me3 ab8898. Cell harvesting Qiagen pcr purification Nextera

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

59053828

Reads aligned (%)

93.7

Duplicates removed (%)

8.6

Number of peaks

5517 (qval < 1E-05)

hg19

Number of total reads

59053828

Reads aligned (%)

89.5

Duplicates removed (%)

10.3

Number of peaks

4035 (qval < 1E-05)