Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Digestive tract
Cell type
SW 480
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

ENA first public
2020-07-06
ENA last update
2019-10-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA6059159
INSDC center alias
3. Department of General Surgery, Shanghai Sixth People’s Hospital East Affiliated to Shanghai University of Medicine & Health Sciences, Shanghai, 201308, China
INSDC center name
3. Department of General Surgery, Shanghai Sixth People’s Hospital East Affiliated to Shanghai University of Medicine & Health Sciences, Shanghai, 201308, China
INSDC first public
2020-07-06T04:03:41Z
INSDC last update
2019-10-08T10:56:39Z
INSDC status
public
Submitter Id
E-MTAB-8417:wild type_2_stat3
broker name
ArrayExpress
cell line
SW480
cell type
epithelial cell of large intestine
common name
human
developmental stage
adult
disease
colorectal carcinoma
genotype
wild type genotype
organism part
colon
sample name
E-MTAB-8417:wild type_2_stat3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
21431912
Reads aligned (%)
96.5
Duplicates removed (%)
2.0
Number of peaks
6452 (qval < 1E-05)

hg19

Number of total reads
21431912
Reads aligned (%)
95.6
Duplicates removed (%)
3.1
Number of peaks
6467 (qval < 1E-05)

Base call quality data from DBCLS SRA