Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
Nanog shRNA
ArrayExpress-Genotype
Nanog shRNA
ArrayExpress-Immunoprecipitate
Anti H3K27me3
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929701
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:20Z
INSDC status
public
Submitter Id
Nanog_KD_H3K27me3_replicate1-sc-2013-07-25T11:46:57Z-1672045
common name
human
sample description
ChIP for H3K4me27 from H9 cells expressing an shRNA against Nanog
sample name
Nanog_KD_H3K27me3_replicate1-sc-2013-07-25T11:46:57Z-1672045

Sequenced DNA Library

library_name
7997235
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
4681465
Reads aligned (%)
98.5
Duplicates removed (%)
1.1
Number of peaks
194 (qval < 1E-05)

hg19

Number of total reads
4681465
Reads aligned (%)
97.9
Duplicates removed (%)
1.2
Number of peaks
158 (qval < 1E-05)

Base call quality data from DBCLS SRA