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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX348539
Illumina Genome Analyzer IIx sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2013-12-02
ENA-LAST-UPDATE
2013-11-29
External Id
SAMEA2266441
INSDC center alias
NIMR
INSDC center name
MRC National Institute for Medical Research
INSDC first public
2013-12-02T17:01:12Z
INSDC last update
2013-11-29T19:58:41Z
INSDC status
public
Submitter Id
Ascl1 ChIP
common name
house mouse
sample name
Ascl1 ChIP
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
40535374
Reads aligned (%)
92.9
Duplicates removed (%)
42.2
Number of peaks
7155 (qval < 1E-05)
mm9
Number of total reads
40535374
Reads aligned (%)
92.7
Duplicates removed (%)
42.3
Number of peaks
7168 (qval < 1E-05)
Base call quality data from
DBCLS SRA