Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
CAL-51
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-05-01
ENA-LAST-UPDATE
2013-10-30
External Id
SAMEA2242495
INSDC center alias
MPIMG
INSDC center name
Max Planck Institute for Molecular Genetics
INSDC first public
2014-05-01T17:00:43Z
INSDC last update
2013-10-30T15:49:10Z
INSDC status
public
Submitter Id
18_CAL51_ATMi_C_4h_ChIP_H3K4me3
cell_line
CAL51
common name
human
sample name
18_CAL51_ATMi_C_4h_ChIP_H3K4me3

Sequenced DNA Library

library_name
I_bc_pelib_516
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP sample preparation protocol with pe adapters and barcode

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
20792581
Reads aligned (%)
99.1
Duplicates removed (%)
15.4
Number of peaks
17191 (qval < 1E-05)

hg19

Number of total reads
20792581
Reads aligned (%)
99.1
Duplicates removed (%)
14.9
Number of peaks
35083 (qval < 1E-05)

Base call quality data from DBCLS SRA