Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
CAL-51
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-05-01
ENA-LAST-UPDATE
2013-10-30
External Id
SAMEA2242697
INSDC center alias
MPIMG
INSDC center name
Max Planck Institute for Molecular Genetics
INSDC first public
2014-05-01T17:00:43Z
INSDC last update
2013-10-30T15:49:10Z
INSDC status
public
Submitter Id
9_CAL51_WT_R_2h_ChIP_RELA
cell_line
CAL51
common name
human
sample name
9_CAL51_WT_R_2h_ChIP_RELA

Sequenced DNA Library

library_name
lib_366
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP sample preparation protocol with pe adapters

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18205419
Reads aligned (%)
96.7
Duplicates removed (%)
2.4
Number of peaks
793 (qval < 1E-05)

hg38

Number of total reads
18205419
Reads aligned (%)
97.4
Duplicates removed (%)
1.8
Number of peaks
546 (qval < 1E-05)

Base call quality data from DBCLS SRA