Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Breast
Cell type
CAL-51
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

Alias
8_CAL51_WT_R_1h_ChIP_RELA
Description
RelA ChIP sequencing from wild-type CAL51 (irradiated cells) at 1h time point
ENA checklist
ERC000011
INSDC center alias
MPIMG
INSDC center name
Max Planck Institute for Molecular Genetics
INSDC first public
2014-05-01T17:00:43Z
INSDC last update
2013-10-30T15:49:10Z
INSDC status
public
SRA accession
ERS364179
Sample Name
ERS364179
Title
CAL51 cells, wild-type, 1h after irradiation, RelA ChIP
cell_line
CAL51

Sequenced DNA Library

library_name
lib_364
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP sample preparation protocol with pe adapters

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17316123
Reads aligned (%)
96.8
Duplicates removed (%)
2.3
Number of peaks
480 (qval < 1E-05)

hg38

Number of total reads
17316123
Reads aligned (%)
97.5
Duplicates removed (%)
1.7
Number of peaks
290 (qval < 1E-05)

Base call quality data from DBCLS SRA