Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
H9 hESC line
ArrayExpress-Compound
Scramble shRNA
ArrayExpress-Genotype
Scramble shRNA
ArrayExpress-Immunoprecipitate
Anti H3K27me3
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2013-11-18
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA1929697
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2013-11-18T09:24:39Z
INSDC last update
2018-03-08T16:37:20Z
INSDC status
public
Submitter Id
Scramble_control_Nanog_H3K27me3_replicate3-sc-2013-07-25T11:46:53Z-1672041
common name
human
sample description
ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Nanog KD lines
sample name
Scramble_control_Nanog_H3K27me3_replicate3-sc-2013-07-25T11:46:53Z-1672041

Sequenced DNA Library

library_name
7944185
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Pre-quality controlled

Sequencing Platform

instrument_model
Illumina MiSeq

hg38

Number of total reads
188236
Reads aligned (%)
98.1
Duplicates removed (%)
0.1
Number of peaks
1 (qval < 1E-05)

hg19

Number of total reads
188236
Reads aligned (%)
97.7
Duplicates removed (%)
0.1
Number of peaks
3 (qval < 1E-05)

Base call quality data from DBCLS SRA