Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

ENA first public
2019-03-14
ENA last update
2019-03-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA5391795
INSDC center alias
unige
INSDC center name
University of Geneva
INSDC first public
2019-03-14T17:01:59Z
INSDC last update
2019-03-04T13:57:48Z
INSDC status
public
Submitter Id
E-MTAB-3657:NA20518_H3K4me1
broker name
ArrayExpress
cell line
lymphoblastoid cell line
cell type
lymphoblast
cell2015samples
no
common name
human
coriell id
NA20518
population
TSI
sample name
E-MTAB-3657:NA20518_H3K4me1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
23150779
Reads aligned (%)
96.9
Duplicates removed (%)
4.1
Number of peaks
39206 (qval < 1E-05)

hg19

Number of total reads
23150779
Reads aligned (%)
96.6
Duplicates removed (%)
4.2
Number of peaks
39586 (qval < 1E-05)

Base call quality data from DBCLS SRA