Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SPI1

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

Alias
E-MTAB-3657:NA07051_PU.1
Broker name
ArrayExpress
Description
Protocols: CEPH samples from 1000 Genomes TruSeq ChIPseq Sample Preparation
ENA checklist
ERC000011
INSDC center alias
unige
INSDC center name
University of Geneva
INSDC first public
2019-03-14T17:01:59Z
INSDC last update
2019-03-04T13:57:43Z
INSDC status
public
SRA accession
ERS3197918
Sample Name
ERS3197918
Title
NA07051_PU.1
cell2015samples
yes
cell_line
lymphoblastoid cell line
cell_type
lymphoblast
coriell id
NA07051
organism
Homo sapiens
population
CEU

Sequenced DNA Library

library_name
NA07051_PU.1_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
CEPH samples from 1000 Genomes TruSeq ChIPseq Sample Preparation

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
102139442
Reads aligned (%)
19.4
Duplicates removed (%)
66.3
Number of peaks
20094 (qval < 1E-05)

hg38

Number of total reads
102139442
Reads aligned (%)
20.5
Duplicates removed (%)
64.9
Number of peaks
18408 (qval < 1E-05)

Base call quality data from DBCLS SRA