ERX3216890
Illumina HiSeq 2000 sequencing; Variation and genetic control of chromatin architecture in humans (ChIPseq)

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

ENA first public
2019-03-14
ENA last update
2019-03-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA5391557
INSDC center alias
unige
INSDC center name
University of Geneva
INSDC first public
2019-03-14T17:01:59Z
INSDC last update
2019-03-04T13:57:43Z
INSDC status
public
Submitter Id
E-MTAB-3657:NA07051_PU.1
broker name
ArrayExpress
cell line
lymphoblastoid cell line
cell type
lymphoblast
cell2015samples
yes
common name
human
coriell id
NA07051
population
CEU
sample name
E-MTAB-3657:NA07051_PU.1

Sequenced DNA Library

library_name
NA07051_PU.1_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
CEPH samples from 1000 Genomes TruSeq ChIPseq Sample Preparation

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
102139442
Reads aligned (%)
57.5
Duplicates removed (%)
66.3
Number of peaks
20094 (qval < 1E-05)

hg38

Number of total reads
102139442
Reads aligned (%)
58.3
Duplicates removed (%)
64.9
Number of peaks
18408 (qval < 1E-05)

Base call quality data from DBCLS SRA