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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Lymphoblastoid cell line
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX3216626
Illumina HiSeq 2000 sequencing; Variation and genetic control of chromatin architecture in humans (ChIPseq)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines
Attributes by original data submitter
Sample
ENA first public
2019-03-14
ENA last update
2019-03-04
ENA-CHECKLIST
ERC000011
External Id
SAMEA5391292
INSDC center alias
unige
INSDC center name
University of Geneva
INSDC first public
2019-03-14T17:01:59Z
INSDC last update
2019-03-04T13:57:38Z
INSDC status
public
Submitter Id
E-MTAB-3657:HG00101_H3K4me1
broker name
ArrayExpress
cell line
lymphoblastoid cell line
cell type
lymphoblast
cell2015samples
no
common name
human
coriell id
HG00101
population
GBR
sample name
E-MTAB-3657:HG00101_H3K4me1
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
18393657
Reads aligned (%)
99.2
Duplicates removed (%)
5.4
Number of peaks
4203 (qval < 1E-05)
hg19
Number of total reads
18393657
Reads aligned (%)
96.1
Duplicates removed (%)
5.6
Number of peaks
19366 (qval < 1E-05)
Base call quality data from
DBCLS SRA