Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
DLBCL
NA
NA

Attributes by original data submitter

Sample

DISEASE_ONTOLOGY_URI
C1333295
ENA first public
2014-08-12
ENA last update
2018-03-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA2165295
GENETIC_CHARACTERISTICS
t(14;18) negative
INSDC center alias
NCMLS
INSDC center name
Nijmegen Centre for Molecular Life Sciences - Radboud University
INSDC first public
2014-08-12T17:01:04Z
INSDC last update
2018-03-08T16:39:00Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://www.ebi.ac.uk/efo/EFO_0002356
Submitter Id
SU-DHL-5_c01
biomaterial provider
DSMZ
biomaterial type
Cell Line
common name
human
differentiation method
Drexler HG chapter 16 Establishment and culture of leukemia-lymphoma cell in Cancer Cell Culture Methods and Protocols 2nd Edition Springer Berlin pp 181 to 200 in 2011
differentiation stage
B cell
disease
Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma
line
SU-DHL-5
medium
RPMI 1640 + 10%FBS + 1% Glutamine
molecule
genomic DNA
sample name
SU-DHL-5_c01
sex
female

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
37298780
Reads aligned (%)
97.9
Duplicates removed (%)
6.6
Number of peaks
1055 (qval < 1E-05)

hg19

Number of total reads
37298780
Reads aligned (%)
96.7
Duplicates removed (%)
7.9
Number of peaks
1160 (qval < 1E-05)

Base call quality data from DBCLS SRA