Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

ArrayExpress-CellType
A549
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Species
Homo Sapien
ENA first public
2018-10-30
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3650216
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:22Z
INSDC last update
2018-03-09T09:26:04Z
INSDC status
public
Submitter Id
A549_BR2_CTCF-sc-2458615
common name
human
sample description
A549_BR2_CTCF
sample name
A549_BR2_CTCF-sc-2458615

Sequenced DNA Library

library_name
DN423860S:B4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
55014504
Reads aligned (%)
188.2
Duplicates removed (%)
3.7
Number of peaks
2129 (qval < 1E-05)

hg38

Number of total reads
55014504
Reads aligned (%)
191.0
Duplicates removed (%)
3.6
Number of peaks
2305 (qval < 1E-05)

Base call quality data from DBCLS SRA