ERX2869657
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

ArrayExpress-CellType
A549
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Species
Homo Sapien
ENA first public
2018-10-30
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3650213
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:22Z
INSDC last update
2018-03-09T09:26:04Z
INSDC status
public
Submitter Id
A549_BR2_H3K4me3-sc-2458612
common name
human
sample description
A549_BR2_H3K4me3
sample name
A549_BR2_H3K4me3-sc-2458612

Sequenced DNA Library

library_name
DN423860S:G3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45275247
Reads aligned (%)
98.1
Duplicates removed (%)
27.1
Number of peaks
24831 (qval < 1E-05)

hg19

Number of total reads
45275247
Reads aligned (%)
97.3
Duplicates removed (%)
27.3
Number of peaks
24238 (qval < 1E-05)

Base call quality data from DBCLS SRA