Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

Alias
A549_BR1_CTCF-sc-2458611
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:22Z
INSDC last update
2018-03-09T09:26:04Z
INSDC status
public
SRA accession
ERS957361
Sample Name
ERS957361
Title
Homo sapiens
sample_description
A549_BR1_CTCF

Sequenced DNA Library

library_name
DN423860S:F3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
48836801
Reads aligned (%)
139.5
Duplicates removed (%)
28.5
Number of peaks
38289 (qval < 1E-05)

hg38

Number of total reads
48836801
Reads aligned (%)
141.1
Duplicates removed (%)
28.3
Number of peaks
39087 (qval < 1E-05)

Base call quality data from DBCLS SRA