ERX2869653
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

ArrayExpress-CellType
A549
ArrayExpress-Immunoprecipitate
H3K4me3
ArrayExpress-Species
Homo Sapien
ENA first public
2018-10-30
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3650209
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:21Z
INSDC last update
2018-03-09T09:25:08Z
INSDC status
public
Submitter Id
A549_BR1_H3K4me3-sc-2458608
common name
human
sample description
A549_BR1_H3K4me3
sample name
A549_BR1_H3K4me3-sc-2458608

Sequenced DNA Library

library_name
DN423860S:C3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45151948
Reads aligned (%)
99.0
Duplicates removed (%)
12.5
Number of peaks
29686 (qval < 1E-05)

hg19

Number of total reads
45151948
Reads aligned (%)
98.5
Duplicates removed (%)
12.6
Number of peaks
29296 (qval < 1E-05)

Base call quality data from DBCLS SRA