Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
Ku812
ArrayExpress-IMMUNOPRECIPITATE
CTCF
ArrayExpress-SPECIES
Human
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048702
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:01:22Z
INSDC status
public
Submitter Id
2ef6a26e-fcfc-11e7-8f97-3c4a9275d6c8
common name
human
sample name
2ef6a26e-fcfc-11e7-8f97-3c4a9275d6c8
subject id
dg_cttv0207282418

Sequenced DNA Library

library_name
DN518363E:F7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
47454002
Reads aligned (%)
182.4
Duplicates removed (%)
2.0
Number of peaks
62923 (qval < 1E-05)

hg38

Number of total reads
47454002
Reads aligned (%)
184.6
Duplicates removed (%)
1.6
Number of peaks
65519 (qval < 1E-05)

Base call quality data from DBCLS SRA