Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
Toledo
Primary Tissue
Blood
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

Alias
2ea1468e-fcfc-11e7-8f97-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:01:20Z
INSDC status
public
SRA accession
ERS2860421
SUBJECT_ID
dg_cttv0207282412
Sample Name
ERS2860421
Title
Toledo_BR2_CTCF

Sequenced DNA Library

library_name
DN518363E:H6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
56121586
Reads aligned (%)
184.8
Duplicates removed (%)
2.2
Number of peaks
54329 (qval < 1E-05)

hg38

Number of total reads
49018880
Reads aligned (%)
194.0
Duplicates removed (%)
2.1
Number of peaks
50837 (qval < 1E-05)

Base call quality data from DBCLS SRA