Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
RAMOS
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

Alias
2dbddcd2-fcfc-11e7-8f97-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:01:13Z
INSDC status
public
SRA accession
ERS2860404
SUBJECT_ID
dg_cttv0207282395
Sample Name
ERS2860404
Title
Ramos_BR1_CTCF

Sequenced DNA Library

library_name
DN518363E:G4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
67695767
Reads aligned (%)
183.8
Duplicates removed (%)
3.3
Number of peaks
55642 (qval < 1E-05)

hg38

Number of total reads
67695767
Reads aligned (%)
184.9
Duplicates removed (%)
3.2
Number of peaks
56466 (qval < 1E-05)

Base call quality data from DBCLS SRA