Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
ARH77
ArrayExpress-IMMUNOPRECIPITATE
H3K27ac
ArrayExpress-SPECIES
Human
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048650
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:01:03Z
INSDC status
public
Submitter Id
2c3b1744-fcfc-11e7-8f97-3c4a9275d6c8
common name
human
sample name
2c3b1744-fcfc-11e7-8f97-3c4a9275d6c8
subject id
dg_cttv0207282367

Sequenced DNA Library

library_name
DN518363E:C1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
52151144
Reads aligned (%)
94.5
Duplicates removed (%)
2.5
Number of peaks
37268 (qval < 1E-05)

hg19

Number of total reads
52151144
Reads aligned (%)
93.2
Duplicates removed (%)
3.0
Number of peaks
37438 (qval < 1E-05)

Base call quality data from DBCLS SRA