Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
ARH77
ArrayExpress-IMMUNOPRECIPITATE
H3K4me3
ArrayExpress-SPECIES
Human
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048649
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:01:03Z
INSDC status
public
Submitter Id
2c2742b4-fcfc-11e7-8f97-3c4a9275d6c8
common name
human
sample name
2c2742b4-fcfc-11e7-8f97-3c4a9275d6c8
subject id
dg_cttv0207282366

Sequenced DNA Library

library_name
DN518363E:B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
47944447
Reads aligned (%)
93.0
Duplicates removed (%)
2.5
Number of peaks
32717 (qval < 1E-05)

hg19

Number of total reads
47944447
Reads aligned (%)
92.1
Duplicates removed (%)
2.7
Number of peaks
32970 (qval < 1E-05)

Base call quality data from DBCLS SRA