Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
HuT 78
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma

Attributes by original data submitter

Sample

Alias
7ec44720-e965-11e6-874d-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:57Z
INSDC status
public
SRA accession
ERS2860359
SUBJECT_ID
dg_cttv0206715332
Sample Name
ERS2860359
Title
HUT78_BR2_B_CTCF

Sequenced DNA Library

library_name
DN478857W:H2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
46134961
Reads aligned (%)
190.0
Duplicates removed (%)
2.2
Number of peaks
46724 (qval < 1E-05)

hg38

Number of total reads
22252544
Reads aligned (%)
193.1
Duplicates removed (%)
2.0
Number of peaks
21958 (qval < 1E-05)

Base call quality data from DBCLS SRA