Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
MEG-01
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

Alias
f6b9cd30-9128-11e6-95da-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T11:04:33Z
INSDC status
public
SRA accession
ERS2862053
Sample Name
ERS2862053
Title
MEG01_BR2_Rep_CTCF
sample_description
MEG01_BR2_Rep_CTCF

Sequenced DNA Library

library_name
DN470460T:H1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
76802559
Reads aligned (%)
101.1
Duplicates removed (%)
48.1
Number of peaks
41374 (qval < 1E-05)

hg38

Number of total reads
76802559
Reads aligned (%)
102.7
Duplicates removed (%)
47.6
Number of peaks
42559 (qval < 1E-05)

Base call quality data from DBCLS SRA