Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
HEL 92.1.7
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

ArrayExpress-CellType
HEL92.1.7
ArrayExpress-Immunoprecipitate
CTCF
ArrayExpress-Species
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5050327
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T11:04:32Z
INSDC status
public
Submitter Id
f6a3fb40-9128-11e6-95da-3c4a9275d6c8
common name
human
sample description
HEL9217_BR2_Rep_CTCF
sample name
f6a3fb40-9128-11e6-95da-3c4a9275d6c8

Sequenced DNA Library

library_name
DN470460T:E1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
63178215
Reads aligned (%)
160.4
Duplicates removed (%)
17.2
Number of peaks
53499 (qval < 1E-05)

hg38

Number of total reads
63178215
Reads aligned (%)
162.5
Duplicates removed (%)
16.9
Number of peaks
55111 (qval < 1E-05)

Base call quality data from DBCLS SRA