Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CELL_TYPE
THP1
ArrayExpress-IMMUNOPRECIPITATE
H3K4me3
ArrayExpress-SPECIES
Homo sapiens
ENA first public
2018-10-30
ENA last update
2018-10-29
ENA-CHECKLIST
ERC000011
External Id
SAMEA5048567
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:33Z
INSDC status
public
Submitter Id
16ed8a60-6082-11e6-821c-3c4a9275d6c8
common name
human
sample name
16ed8a60-6082-11e6-821c-3c4a9275d6c8
subject id
dg_cttv0206538374

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
40248060
Reads aligned (%)
99.1
Duplicates removed (%)
7.4
Number of peaks
20783 (qval < 1E-05)

hg19

Number of total reads
40248060
Reads aligned (%)
98.5
Duplicates removed (%)
7.3
Number of peaks
30902 (qval < 1E-05)

Base call quality data from DBCLS SRA