Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

Alias
191b3fd0-6082-11e6-821c-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2018-10-30T17:02:45Z
INSDC last update
2018-10-29T10:00:43Z
INSDC status
public
SRA accession
ERS2860321
SUBJECT_ID
dg_cttv0206538414
Sample Name
ERS2860321
Title
THP1_BR2_PL_CTCF

Sequenced DNA Library

library_name
DN466158M:F6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
49976388
Reads aligned (%)
174.1
Duplicates removed (%)
11.0
Number of peaks
41869 (qval < 1E-05)

hg38

Number of total reads
49976388
Reads aligned (%)
176.1
Duplicates removed (%)
10.7
Number of peaks
42941 (qval < 1E-05)

Base call quality data from DBCLS SRA