Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

ENA first public
2019-01-18
ENA last update
2018-09-19
ENA-CHECKLIST
ERC000011
External Id
SAMEA4924277
INSDC center alias
EPFL
INSDC center name
EPFL
INSDC first public
2019-01-18T17:02:22Z
INSDC last update
2018-09-19T17:05:05Z
INSDC status
public
Submitter Id
E-MTAB-7179:Sample 42
broker name
ArrayExpress
cell line
GM12776
common name
human
developmental stage
adult
organism part
blood
sample name
E-MTAB-7179:Sample 42
sex
female

Sequenced DNA Library

library_name
Sample 42_p
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
FloChIP immunoprecipitation (FloChIP technique is a novel microfluidic immunoprecipitation system). The anti-mef2a antibody from Santa Cruz (sc-17785) was used in this study. PCR purification Nextera with custom reagents and Tn5

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
6514613
Reads aligned (%)
86.2
Duplicates removed (%)
16.3
Number of peaks
68 (qval < 1E-05)

hg19

Number of total reads
6514613
Reads aligned (%)
84.2
Duplicates removed (%)
16.3
Number of peaks
88 (qval < 1E-05)

Base call quality data from DBCLS SRA