Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
GM12249
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-01-18
ENA last update
2018-09-19
ENA-CHECKLIST
ERC000011
External Id
SAMEA4924262
INSDC center alias
EPFL
INSDC center name
EPFL
INSDC first public
2019-01-18T17:02:22Z
INSDC last update
2018-09-19T17:05:05Z
INSDC status
public
Submitter Id
E-MTAB-7179:Sample 29
broker name
ArrayExpress
cell line
GM12249
common name
human
developmental stage
adult
organism part
blood
sample name
E-MTAB-7179:Sample 29
sex
female

Sequenced DNA Library

library_name
Sample 29_p
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
FloChIP immunoprecipitation (FloChIP technique is a novel microfluidic immunoprecipitation system). The anti-mef2a antibody from Santa Cruz (sc-17785) was used in this study. PCR purification Nextera with custom reagents and Tn5

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
7065374
Reads aligned (%)
93.5
Duplicates removed (%)
20.9
Number of peaks
307 (qval < 1E-05)

hg19

Number of total reads
7065374
Reads aligned (%)
92.4
Duplicates removed (%)
20.9
Number of peaks
328 (qval < 1E-05)

Base call quality data from DBCLS SRA