Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

ENA first public
2019-01-01
ENA last update
2018-08-14
ENA-CHECKLIST
ERC000011
External Id
SAMEA4828303
INSDC center alias
EPFL
INSDC center name
EPFL
INSDC first public
2019-01-01T17:01:59Z
INSDC last update
2018-08-14T11:50:03Z
INSDC status
public
Submitter Id
E-MTAB-7150:50k cells
broker name
ArrayExpress
cell line
GM12878
common name
human
developmental stage
adult
sample name
E-MTAB-7150:50k cells
sex
female

Sequenced DNA Library

library_name
50k cells_p
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
FloChIP, custom (FloChIP technique is a novel microfluidic immunoprecipitation system, the details of which will be published in due course) PCR purification and ampure XP bead size selection Nextera with custom reagents and Tn5

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
8062490
Reads aligned (%)
90.9
Duplicates removed (%)
43.4
Number of peaks
2012 (qval < 1E-05)

hg19

Number of total reads
8062490
Reads aligned (%)
90.5
Duplicates removed (%)
43.6
Number of peaks
2069 (qval < 1E-05)

Base call quality data from DBCLS SRA