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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX2443916
Illumina HiSeq 4000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
ENA first public
2018-09-23
ENA last update
2018-03-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA104694758
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2018-09-23T17:03:12Z
INSDC last update
2018-03-15T14:09:47Z
INSDC status
public
Submitter Id
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-2
cell line
HEK293
common name
human
sample name
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-2
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8200400
Reads aligned (%)
99.8
Duplicates removed (%)
0.1
Number of peaks
106 (qval < 1E-05)
hg19
Number of total reads
8200400
Reads aligned (%)
99.8
Duplicates removed (%)
0.1
Number of peaks
77 (qval < 1E-05)
Base call quality data from
DBCLS SRA