Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RFX5

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

Alias
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-2
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2018-09-23T17:03:12Z
INSDC last update
2018-03-15T14:09:47Z
INSDC status
public
SRA accession
ERS2296141
Sample Name
ERS2296141
Title
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-2
cell_line
HEK293

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
11140975
Reads aligned (%)
163.6
Duplicates removed (%)
15.6
Number of peaks
308 (qval < 1E-05)

hg38

Number of total reads
11140975
Reads aligned (%)
164.0
Duplicates removed (%)
15.6
Number of peaks
279 (qval < 1E-05)

Base call quality data from DBCLS SRA