ERX2443832
Illumina HiSeq 4000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

ENA first public
2018-09-23
ENA last update
2018-03-15
ENA-CHECKLIST
ERC000011
External Id
SAMEA104694757
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2018-09-23T17:03:12Z
INSDC last update
2018-03-15T14:09:47Z
INSDC status
public
Submitter Id
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-1
cell line
HEK293
common name
human
sample name
MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-1

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12821469
Reads aligned (%)
97.7
Duplicates removed (%)
17.6
Number of peaks
106 (qval < 1E-05)

hg19

Number of total reads
12821469
Reads aligned (%)
97.5
Duplicates removed (%)
17.6
Number of peaks
128 (qval < 1E-05)

Base call quality data from DBCLS SRA