Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Lung
Cell type
LK-2
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

Alias
2faccf40-83c1-11e6-ad90-3c4a9275d6c8
ENA checklist
ERC000011
INSDC center name
SC
INSDC first public
2017-11-28T17:02:40Z
INSDC last update
2016-10-31T11:32:15Z
INSDC status
public
SRA accession
ERS1426875
Sample Name
ERS1426875
Title
LK2_CONT_Sox2
sample_description
LK2_CONT_Sox2

Sequenced DNA Library

library_name
DN468513T:B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
40594784
Reads aligned (%)
169.7
Duplicates removed (%)
12.6
Number of peaks
536 (qval < 1E-05)

hg38

Number of total reads
40594784
Reads aligned (%)
172.0
Duplicates removed (%)
12.4
Number of peaks
1217 (qval < 1E-05)

Base call quality data from DBCLS SRA