Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-DevelopmentalStage
Tumour
ArrayExpress-Immunoprecipitate
ARID1A
ArrayExpress-Phenotype
TNBC cancer (with BCL11A KD)
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2017-10-31
ENA last update
2016-07-12
ENA-CHECKLIST
ERC000011
External Id
SAMEA4075782
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-10-31T10:19:10Z
INSDC last update
2016-07-12T16:58:40Z
INSDC status
public
Submitter Id
49355b70-d3f5-11e5-88b1-3c4a9275d6c6
common name
human
sample description
ARID1A chipseq
sample name
49355b70-d3f5-11e5-88b1-3c4a9275d6c6

Sequenced DNA Library

library_name
DN457801P:A2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
23735026
Reads aligned (%)
92.8
Duplicates removed (%)
70.8
Number of peaks
250 (qval < 1E-05)

hg19

Number of total reads
23735026
Reads aligned (%)
92.0
Duplicates removed (%)
71.4
Number of peaks
156 (qval < 1E-05)

Base call quality data from DBCLS SRA