ERX2242396
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-DevelopmentalStage
Tumour
ArrayExpress-Phenotype
TNBC cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA first public
2017-10-31
ENA last update
2016-07-12
ENA-CHECKLIST
ERC000011
External Id
SAMEA4075779
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-10-31T10:19:10Z
INSDC last update
2016-07-12T16:58:38Z
INSDC status
public
Submitter Id
491131a0-d3f5-11e5-88b1-3c4a9275d6c6
common name
human
sample description
Input DNA
sample name
491131a0-d3f5-11e5-88b1-3c4a9275d6c6

Sequenced DNA Library

library_name
DN457801P:F1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22916963
Reads aligned (%)
98.0
Duplicates removed (%)
0.5
Number of peaks
644 (qval < 1E-05)

hg19

Number of total reads
22916963
Reads aligned (%)
97.0
Duplicates removed (%)
0.7
Number of peaks
305 (qval < 1E-05)

Base call quality data from DBCLS SRA