Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Breast cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX2242373
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Breast
Cell type
Breast cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
BREAST
ArrayExpress-Immunoprecipitate
INPUT
ArrayExpress-OrganismPart
BREAST
ArrayExpress-Sex
female
ArrayExpress-Species
Homo Sapien
ENA first public
2017-10-31
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3638997
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-10-31T10:19:10Z
INSDC last update
2018-03-09T09:25:59Z
INSDC status
public
Submitter Id
231_INPUT-sc-2456062
common name
human
sample description
ChIPSeq_INPUT
sample name
231_INPUT-sc-2456062
Sequenced DNA Library
library_name
DN423860S:E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
40095362
Reads aligned (%)
98.4
Duplicates removed (%)
0.8
Number of peaks
1044 (qval < 1E-05)
hg19
Number of total reads
40095362
Reads aligned (%)
97.6
Duplicates removed (%)
1.0
Number of peaks
559 (qval < 1E-05)
Base call quality data from
DBCLS SRA