ERX2242353
NextSeq 500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

ENA first public
2019-01-09
ENA last update
2017-09-28
ENA-CHECKLIST
ERC000011
External Id
SAMEA104324886
INSDC center alias
EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN
INSDC center name
EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN
INSDC first public
2019-01-09T17:03:24Z
INSDC last update
2017-09-28T10:40:37Z
INSDC status
public
Submitter Id
CBX7 H3K9me3 #2
cell type
HuCD34+ HSPC
common name
human
sample name
CBX7 H3K9me3 #2

Sequenced DNA Library

library_name
SAMEA104324886
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38822007
Reads aligned (%)
93.5
Duplicates removed (%)
4.6
Number of peaks
6081 (qval < 1E-05)

hg19

Number of total reads
38822007
Reads aligned (%)
90.8
Duplicates removed (%)
5.5
Number of peaks
4925 (qval < 1E-05)

Base call quality data from DBCLS SRA