ERX2075300
Illumina HiSeq 3000 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryo
Cell type
20-24h embryos
NA
NA

Attributes by original data submitter

Sample

Alias
A716_H3K27me3_st17_EzTS_shifted_rep1
Description
H3K27me3 ChIP (Diagenode, C15410195 A1811-001P) corresponding Input A716_Input_st17_EzTS_shifted_rep1
ENA checklist
ERC000011
INSDC center alias
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC center name
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC first public
2017-07-13T17:03:01Z
INSDC last update
2017-07-12T10:02:48Z
INSDC status
public
SRA accession
ERS1799717
Sample Name
ERS1799717
Title
H3K27me3_st17_EzTS_shifted_rep1
dev_stage
embryos st 17

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
30361136
Reads aligned (%)
85.0
Duplicates removed (%)
32.3
Number of peaks
2848 (qval < 1E-05)

dm6

Number of total reads
30361136
Reads aligned (%)
84.6
Duplicates removed (%)
33.4
Number of peaks
2054 (qval < 1E-05)

Base call quality data from DBCLS SRA