ERX2049943
NextSeq 500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-12-31
ENA last update
2017-05-23
ENA-CHECKLIST
ERC000011
External Id
SAMEA104091589
INSDC center alias
GENENTECH INC.
INSDC center name
GENENTECH INC.
INSDC first public
2017-12-31T17:02:38Z
INSDC last update
2017-05-23T01:10:51Z
INSDC status
public
Submitter Id
CHIP_CBPP300_4
common name
human
sample name
CHIP_CBPP300_4

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36044715
Reads aligned (%)
86.7
Duplicates removed (%)
74.4
Number of peaks
4476 (qval < 1E-05)

hg19

Number of total reads
36044715
Reads aligned (%)
86.1
Duplicates removed (%)
75.9
Number of peaks
4391 (qval < 1E-05)

Base call quality data from DBCLS SRA