Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-06-29
ENA last update
2017-04-18
ENA-CHECKLIST
ERC000011
External Id
SAMEA103982086
INSDC center alias
Wellcome Trust/Cancer Research UK Gurdon Institute Department of Genetics, University of Cambridge Wellcome Trust Sanger Institute
INSDC center name
Wellcome Trust/Cancer Research UK Gurdon Institute Department of Genetics, University of Cambridge Wellcome Trust Sanger Institute
INSDC first public
2017-06-29T17:02:36Z
INSDC last update
2017-04-18T17:39:46Z
INSDC status
public
Submitter Id
E-MTAB-5662:SX2929-input-2
broker name
ArrayExpress
genotype
emb-4
sample name
E-MTAB-5662:SX2929-input-2

Sequenced DNA Library

library_name
SX2929-input-2_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Strains were cultured using standard methods (Brenner, 1974) The experiment was carried out according to Schmidl et al. 2015, Nature. Library preparation was performed using the Illumina Nextera DNA prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

ce11

Number of total reads
5378946
Reads aligned (%)
19.5
Duplicates removed (%)
16.3
Number of peaks
362 (qval < 1E-05)

ce10

Number of total reads
5378946
Reads aligned (%)
19.5
Duplicates removed (%)
16.3
Number of peaks
362 (qval < 1E-05)

Base call quality data from DBCLS SRA