Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

ENA first public
2017-04-16
ENA last update
2017-04-06
ENA-CHECKLIST
ERC000011
External Id
SAMEA103959877
INSDC center alias
VCU
INSDC center name
Virginia Commonwealth University
INSDC first public
2017-04-16T17:01:30Z
INSDC last update
2017-04-06T15:43:01Z
INSDC status
public
Submitter Id
E-MTAB-5653:Vector p53-1
broker name
ArrayExpress
cell line
NCI-H1299
common name
human
genotype
pcmv Bam
sample name
E-MTAB-5653:Vector p53-1

Sequenced DNA Library

library_name
Vector p53-1_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
16560317
Reads aligned (%)
60.7
Duplicates removed (%)
6.0
Number of peaks
1341 (qval < 1E-05)

hg19

Number of total reads
16560317
Reads aligned (%)
60.2
Duplicates removed (%)
8.3
Number of peaks
1392 (qval < 1E-05)

Base call quality data from DBCLS SRA