Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

Alias
E-MTAB-5653:R273H p53-1
Broker name
ArrayExpress
Description
Protocols: ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG
ENA checklist
ERC000011
INSDC center alias
VCU
INSDC center name
Virginia Commonwealth University
INSDC first public
2017-04-16T17:01:30Z
INSDC last update
2017-04-06T15:43:01Z
INSDC status
public
SRA accession
ERS1649041
Sample Name
ERS1649041
Title
R273H p53-1
cell_line
NCI-H1299
genotype
p53-R273H
organism
Homo sapiens

Sequenced DNA Library

library_name
R273H p53-1_s
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG ChIP-seq of H1299 cells stably transfected with empty vector (Vector) or the p53 mutant R273H and ChIP'd for p53 or IgG

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
15499229
Reads aligned (%)
86.2
Duplicates removed (%)
4.0
Number of peaks
22091 (qval < 1E-05)

hg38

Number of total reads
15499229
Reads aligned (%)
88.2
Duplicates removed (%)
2.6
Number of peaks
22047 (qval < 1E-05)

Base call quality data from DBCLS SRA