Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXB13

Cell type

Cell type Class
Prostate
Cell type
LHSAR
NA
NA

Attributes by original data submitter

Sample

Alias
HOXB13_sc-66923_LHSAR-HOXB13-Transduced_Replicate-2_Batch-3
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
SRA accession
ERS1642954
Sample Name
ERS1642954
Title
HOXB13 ChIP-seq sample
cell_line
HOXB13 transduced LHSAR cell

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
52423795
Reads aligned (%)
89.1
Duplicates removed (%)
9.8
Number of peaks
138383 (qval < 1E-05)

hg38

Number of total reads
52423795
Reads aligned (%)
89.7
Duplicates removed (%)
9.6
Number of peaks
138553 (qval < 1E-05)

Base call quality data from DBCLS SRA