ERX1965642
Illumina HiSeq 4000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
LHSAR
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-05-04
ENA last update
2017-03-30
ENA-CHECKLIST
ERC000011
External Id
SAMEA103953785
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
Submitter Id
HOXB13_sc-66923_LHSAR-HOXB13-Transduced_Replicate-1_Batch-3
cell line
HOXB13 transduced LHSAR cell
common name
human
sample name
HOXB13_sc-66923_LHSAR-HOXB13-Transduced_Replicate-1_Batch-3

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
36092861
Reads aligned (%)
98.2
Duplicates removed (%)
8.6
Number of peaks
108627 (qval < 1E-05)

hg38

Number of total reads
36092861
Reads aligned (%)
98.6
Duplicates removed (%)
8.5
Number of peaks
104685 (qval < 1E-05)

Base call quality data from DBCLS SRA