Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Mycn

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

Alias
n-Myc_ab16898_Tet-TKO-mES_Replicate-2_Batch-2
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
SRA accession
ERS1642950
Sample Name
ERS1642950
Title
n-Myc ChIP-seq sample
cell_line
mouse embryonic cell deficient in Tet1, Tet2 and Tet3

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
32101841
Reads aligned (%)
87.8
Duplicates removed (%)
19.3
Number of peaks
802 (qval < 1E-05)

mm9

Number of total reads
32101841
Reads aligned (%)
87.5
Duplicates removed (%)
19.3
Number of peaks
741 (qval < 1E-05)

Base call quality data from DBCLS SRA