ERX1965637
Illumina HiSeq 4000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-05-04
ENA last update
2017-03-30
ENA-CHECKLIST
ERC000011
External Id
SAMEA103953780
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
Submitter Id
n-Myc_ab16898_Dnmt-TKO-mES_Replicate-2_Batch-2
cell line
mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b
common name
house mouse
sample name
n-Myc_ab16898_Dnmt-TKO-mES_Replicate-2_Batch-2

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31654867
Reads aligned (%)
95.0
Duplicates removed (%)
19.5
Number of peaks
905 (qval < 1E-05)

mm9

Number of total reads
31654867
Reads aligned (%)
94.8
Duplicates removed (%)
19.6
Number of peaks
876 (qval < 1E-05)

Base call quality data from DBCLS SRA