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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Pou5f1
wikigenes
PDBj
CellType: Embryonic cells
ATCC
MeSH
RIKEN BRC
ERX1965634
Illumina HiSeq 4000 sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Pou5f1
Cell type
Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA
Attributes by original data submitter
Sample
Alias
Oct4_ab19857_wild-type-mES_Replicate-2_Batch-2
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
SRA accession
ERS1642945
Sample Name
ERS1642945
Title
Oct4 ChIP-seq sample
cell_line
mouse embryonic cell
Sequenced DNA Library
library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
37420308
Reads aligned (%)
96.6
Duplicates removed (%)
19.6
Number of peaks
2451 (qval < 1E-05)
mm9
Number of total reads
37420308
Reads aligned (%)
96.3
Duplicates removed (%)
19.6
Number of peaks
2429 (qval < 1E-05)
Base call quality data from
DBCLS SRA