ERX1965634
Illumina HiSeq 4000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pou5f1

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

Alias
Oct4_ab19857_wild-type-mES_Replicate-2_Batch-2
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:30Z
INSDC status
public
SRA accession
ERS1642945
Sample Name
ERS1642945
Title
Oct4 ChIP-seq sample
cell_line
mouse embryonic cell

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37420308
Reads aligned (%)
96.6
Duplicates removed (%)
19.6
Number of peaks
2451 (qval < 1E-05)

mm9

Number of total reads
37420308
Reads aligned (%)
96.3
Duplicates removed (%)
19.6
Number of peaks
2429 (qval < 1E-05)

Base call quality data from DBCLS SRA