Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pou5f1

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

Alias
Oct4_AF1759_Tet-TKO-mES_Replicate-1_Batch-1
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:29Z
INSDC status
public
SRA accession
ERS1642927
Sample Name
ERS1642927
Title
Oct4 ChIP-seq sample
cell_line
mouse embryonic cell deficient in Tet1, Tet2 and Tet3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
59422764
Reads aligned (%)
97.0
Duplicates removed (%)
20.2
Number of peaks
6070 (qval < 1E-05)

mm9

Number of total reads
59422764
Reads aligned (%)
96.7
Duplicates removed (%)
20.1
Number of peaks
6065 (qval < 1E-05)

Base call quality data from DBCLS SRA